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10X Genomics 10x genomics visium platform
10x Genomics Visium Platform, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/10x+visium+platform/cellranger/pmc13197639-320-7-7
Average 86 stars, based on 1 article reviews
10x genomics visium platform - by Bioz Stars, 2026-10
86/100 stars

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Article Title: A composite scaling network of EfficientNet for improving spatial domain identification performance.
Article Snippet: The 10x Visium platform includes four data sets: the human dorsolateral prefrontal cortex (DLPFC) data set (http://research.libd.org/spatialLIBD/), along with data sets for human breast cancer, mouse brain sagittal anterior, and CytAssist fresh frozen mouse brain (https://www.10xgenomics.com/).

Article Title: A composite scaling network of EfficientNet for improving spatial domain identification performance
Article Snippet: The 10x Visium platform includes four data sets: the human dorsolateral prefrontal cortex (DLPFC) data set ( http://research.libd.org/spatialLIBD/ ), along with data sets for human breast cancer, mouse brain sagittal anterior, and CytAssist fresh frozen mouse brain ( https://www.10xgenomics.com/ ).

Spatial Transcriptomics:

Article Title: GatorST: A Versatile Contrastive Meta-Learning Framework for Spatial Transcriptomic Data Analysis.
Article Snippet: .. Data Availability Statement The spatial transcriptomics datasets analyzed in this study are publicly available from the following sources: the LIBD human dorsolateral prefrontal cortex (DLPFC) dataset, which was obtained using the 10x Visium platform ( http://research.libd.org/spatialLIBD/ ); human lymph node Visium dataset acquired from tissue containing germinal centers (GCs) and obtained from GEO (accession no. GSE263617); the human breast cancer dataset ( https://www.10xgenomics.com/datasets/ human- breast- cancer- block- a- section- 1- 1- standard- 1- 1- 0 ) and the mouse brain tissue dataset ( https://www.10xgenomics.com/datasets/mousebrain- serial- section- 1- sagittal- anterior- 1- standard- 1- 1- 0 ), both obtained Small Methods, 2026 e C om m ons L icense f E l a J p s R a 2 2 C N s 3 D d 4 M 0 5 t 1 6 T R 1 7 T B 0 8 A C 0 9 o ( 1 o 3 1 S ( 1 S D o 1 R 1 1 T ( 1 S V 1 1 S S nloaded from https://onlinelibrary.w iley.com /doi/10.1002/sm td.202600006 by IN A SP - N E PA L , W iley O nline L ibrary on [10/04/2026]. ..

Article Title: GatorST: A Versatile Contrastive Meta‐Learning Framework for Spatial Transcriptomic Data Analysis
Article Snippet: .. The spatial transcriptomics datasets analyzed in this study are publicly available from the following sources: the LIBD human dorsolateral prefrontal cortex (DLPFC) dataset, which was obtained using the 10x Visium platform ( http://research.libd.org/spatialLIBD/ ); human lymph node Visium dataset acquired from tissue containing germinal centers (GCs) and obtained from GEO (accession no. GSE263617 ); the human breast cancer dataset ( https://www.10xgenomics.com/datasets/human‐breast‐cancer‐block‐a‐section‐1‐1‐standard‐1‐1‐0 ) and the mouse brain tissue dataset ( https://www.10xgenomics.com/datasets/mouse‐brain‐serial‐section‐1‐sagittal‐anterior‐1‐standard‐1‐1‐0 ), both obtained from the 10x Genomics Data Repository. .. In addition, we used an E9.5 mouse embryo dataset generated with Stereo‐seq and downloaded from the MOSTA resource ( https://db.cngb.org/stomics/mosta/ ), a Stereo‐seq dataset of mouse olfactory bulb ( https://github.com/JinmiaoChenLab/SEDR_analyses ), and a mouse hippocampus dataset profiled with Slide‐seqV2 ( https://portals.broadinstitute.org/single_cell/study/slide‐seq‐study ).

Article Title: Techniques and analytic workflow for spatial transcriptomics and its application to allergy and inflammation.
Article Snippet: Abbreviations used COPD: Chronic obstructive pulmonary disease DEG: Differentially expressed gene FOV: Field of view PC: Principal component ROI: Region of interest scRNA-seq: Single-cell RNA sequencing SVG: Spatially variable gene UMAP: Uniform Manifold Approximation and Projection Spatial profiling, through single-cell gene-level expression data paired with cell localization, offers unprecedented biologic insights within the intact spatial context of cells in healthy and diseased tissue, adding a novel dimension to data interpretation.. This review summarizes recent developments in this field, its application to allergy and inflammation, and recent single-cell resolution platforms designed for spatial transcriptomics with a focus on data processing and analyses for efficient biologic interpretation of data.. By preserving spatial context, these technologies provide critical insights into tissue architecture and cellular interactions that are unattainable with traditional transcriptomics methods, such as revealing localized inflammatory cell network in atopic dermatitis and T-cell interactions in the lung in chronic obstructive pulmonary disease.

Blocking Assay:

Article Title: GatorST: A Versatile Contrastive Meta-Learning Framework for Spatial Transcriptomic Data Analysis.
Article Snippet: .. Data Availability Statement The spatial transcriptomics datasets analyzed in this study are publicly available from the following sources: the LIBD human dorsolateral prefrontal cortex (DLPFC) dataset, which was obtained using the 10x Visium platform ( http://research.libd.org/spatialLIBD/ ); human lymph node Visium dataset acquired from tissue containing germinal centers (GCs) and obtained from GEO (accession no. GSE263617); the human breast cancer dataset ( https://www.10xgenomics.com/datasets/ human- breast- cancer- block- a- section- 1- 1- standard- 1- 1- 0 ) and the mouse brain tissue dataset ( https://www.10xgenomics.com/datasets/mousebrain- serial- section- 1- sagittal- anterior- 1- standard- 1- 1- 0 ), both obtained Small Methods, 2026 e C om m ons L icense f E l a J p s R a 2 2 C N s 3 D d 4 M 0 5 t 1 6 T R 1 7 T B 0 8 A C 0 9 o ( 1 o 3 1 S ( 1 S D o 1 R 1 1 T ( 1 S V 1 1 S S nloaded from https://onlinelibrary.w iley.com /doi/10.1002/sm td.202600006 by IN A SP - N E PA L , W iley O nline L ibrary on [10/04/2026]. ..

RNA Sequencing:

Article Title: Precision unveiled: Synergistic genomic landscapes in breast cancer-Integrating single-cell analysis and decoding drug toxicity for elite prognostication and tailored therapeutics.
Article Snippet: Hao Chi, Department of Clinical Medicine, Southwest Medical University, Luzhou 646000, China.. Email: chihao7511@163.com Abstract Background: Globally, breast cancer, with diverse subtypes and prognoses, necessitates tailored therapies for enhanced survival rates.. A key focus is glutamine metabolism, governed by select genes.

Generated:

Article Title: MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
Article Snippet: .. These adult mouse brain tissue sections are sequenced by the 10X Visium platform and the generated spatially resolved transcriptomics data made publicly available by 10X Genomics. ..

Transcriptomics:

Article Title: MUSTANG: Multi-sample spatial transcriptomics data analysis with cross-sample transcriptional similarity guidance
Article Snippet: .. These adult mouse brain tissue sections are sequenced by the 10X Visium platform and the generated spatially resolved transcriptomics data made publicly available by 10X Genomics. ..

Amplification:

Article Title: Techniques and analytic workflow for spatial transcriptomics and its application to allergy and inflammation.
Article Snippet: Abbreviations used COPD: Chronic obstructive pulmonary disease DEG: Differentially expressed gene FOV: Field of view PC: Principal component ROI: Region of interest scRNA-seq: Single-cell RNA sequencing SVG: Spatially variable gene UMAP: Uniform Manifold Approximation and Projection Spatial profiling, through single-cell gene-level expression data paired with cell localization, offers unprecedented biologic insights within the intact spatial context of cells in healthy and diseased tissue, adding a novel dimension to data interpretation.. This review summarizes recent developments in this field, its application to allergy and inflammation, and recent single-cell resolution platforms designed for spatial transcriptomics with a focus on data processing and analyses for efficient biologic interpretation of data.. By preserving spatial context, these technologies provide critical insights into tissue architecture and cellular interactions that are unattainable with traditional transcriptomics methods, such as revealing localized inflammatory cell network in atopic dermatitis and T-cell interactions in the lung in chronic obstructive pulmonary disease.

Sequencing:

Article Title: Techniques and analytic workflow for spatial transcriptomics and its application to allergy and inflammation.
Article Snippet: Abbreviations used COPD: Chronic obstructive pulmonary disease DEG: Differentially expressed gene FOV: Field of view PC: Principal component ROI: Region of interest scRNA-seq: Single-cell RNA sequencing SVG: Spatially variable gene UMAP: Uniform Manifold Approximation and Projection Spatial profiling, through single-cell gene-level expression data paired with cell localization, offers unprecedented biologic insights within the intact spatial context of cells in healthy and diseased tissue, adding a novel dimension to data interpretation.. This review summarizes recent developments in this field, its application to allergy and inflammation, and recent single-cell resolution platforms designed for spatial transcriptomics with a focus on data processing and analyses for efficient biologic interpretation of data.. By preserving spatial context, these technologies provide critical insights into tissue architecture and cellular interactions that are unattainable with traditional transcriptomics methods, such as revealing localized inflammatory cell network in atopic dermatitis and T-cell interactions in the lung in chronic obstructive pulmonary disease.



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